STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88948.1Putative metalloprotease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (121 aa)    
Predicted Functional Partners:
CCH88949.1
Homologs of previously reported genes of unknown function.
       0.762
CCH87391.1
Homologs of previously reported genes of unknown function.
  
     0.708
CCH88754.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.707
CCH85720.1
Homologs of previously reported genes of unknown function.
  
     0.690
CCH89835.1
Homologs of previously reported genes of unknown function.
  
     0.662
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.661
CCH86537.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.633
CCH86225.1
Homologs of previously reported genes of unknown function.
  
     0.574
asnB
Asparagine synthetase [glutamine-hydrolyzing]; Function of strongly homologous gene; enzyme.
       0.572
CCH86232.1
Putative HAD hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.567
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.