STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erpAIron-sulfur cluster insertion protein erpA; Function of strongly homologous gene; factor; Belongs to the HesB/IscA family. (118 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase; Function of strongly homologous gene; enzyme.
 
  
 0.892
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
  
  
 0.881
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
  
   
 0.758
CCH90411.1
Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
 
 
 0.711
CCH88952.1
Homologs of previously reported genes of unknown function.
       0.620
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
   
 0.593
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.573
sufC
ABC transporter associated with Fe-S cluster assembly, ATP binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.569
sufD
FeS assembly protein SufD; Function of strongly homologous gene; cell process.
  
 
 0.554
sufB
Transport protein associated with Fe-S cluster assembly, sufB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.554
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.