STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88952.1Homologs of previously reported genes of unknown function. (204 aa)    
Predicted Functional Partners:
CCH87401.1
Homologs of previously reported genes of unknown function.
 
     0.791
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.765
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.751
CCH88858.1
YGGT family protein; Homologs of previously reported genes of unknown function.
  
     0.741
CCH88096.1
Transcriptional regulator, MerR family; Function of strongly homologous gene; regulator.
  
     0.720
CCH90005.1
Homologs of previously reported genes of unknown function.
  
     0.720
gpmB-2
Phosphoglycerate mutase; Function of strongly homologous gene; enzyme.
  
     0.717
CCH89328.1
Homologs of previously reported genes of unknown function.
  
     0.711
CCH90510.1
Homologs of previously reported genes of unknown function.
  
     0.709
CCH86426.1
Septum formation initiator; Function of strongly homologous gene; cell process.
  
     0.701
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.