STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88956.1Homologs of previously reported genes of unknown function. (90 aa)    
Predicted Functional Partners:
CCH86364.1
Homologs of previously reported genes of unknown function.
 
    0.881
CCH89406.1
Protein of unknown function, putative recB domain; No homology to any previously reported sequences.
  
    0.840
CCH89444.1
Putative DNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.840
CCH88955.1
Homologs of previously reported genes of unknown function.
       0.806
CCH88957.1
Homologs of previously reported genes of unknown function.
 
     0.711
CCH89532.1
N-6 DNA methylase; Function of strongly homologous gene; enzyme.
  
  
 0.555
CCH85634.1
Protein of unknown function; No homology to any previously reported sequences.
       0.528
CCH88954.1
Homologs of previously reported genes of unknown function.
       0.520
CCH86722.1
Homologs of previously reported genes of unknown function.
  
     0.488
CCH88847.1
Homologs of previously reported genes of unknown function.
  
     0.455
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.