STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88963.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (300 aa)    
Predicted Functional Partners:
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; Function of strongly homologous gene; enzyme.
  
    0.721
CCH90665.1
NAD-dependent epimerase/dehydratase; Function of strongly homologous gene; enzyme.
 
    0.712
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
 
    0.570
CCH86209.1
Deoxyribodipyrimidine photolyase-related protein; Function of strongly homologous gene; enzyme.
      0.551
CCH88960.1
Homologs of previously reported genes of unknown function.
     
 0.526
bfmBC
Dihydrolipoyl dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.493
ideR
Iron-dependent repressor ideR; Function of strongly homologous gene; regulator.
   
    0.484
CCH90898.1
Conserved protein of unknown function, putative Ca2+-binding domain; Homologs of previously reported genes of unknown function.
   
    0.484
CCH87081.1
Putative metal permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.449
CCH89347.1
Cation transporter; Function of strongly homologous gene; transporter.
  
    0.449
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.