STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88971.1Sulfate-transporting ATPase; Function of strongly homologous gene; enzyme. (185 aa)    
Predicted Functional Partners:
CCH88970.1
ABC-type multidrug transport system, ATPase component (fragment); Function of strongly homologous gene; transporter.
     0.991
CCH88969.1
Homologs of previously reported genes of unknown function.
 
 
  0.941
CCH87107.1
Nod factor export ATP-binding protein I (fragment).
  
     0.756
CCH88972.1
Two component histidine kinase dimerization and phosphoacceptor region; Function of strongly homologous gene; enzyme.
 
     0.715
CCH86456.1
ABC-type transport system, ATP-binding protein; Function of strongly homologous gene; enzyme.
  
     0.689
CCH88973.1
Two-component system, NarL family, response regulator DesR; Function of strongly homologous gene; regulator.
 
     0.578
CCH89949.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
  
     0.550
CCH90188.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
 
  0.546
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Function of strongly homologous gene; transporter.
  
  
  0.528
CCH86439.1
Putative ABC transporter ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.511
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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