Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH88972.1Two component histidine kinase dimerization and phosphoacceptor region; Function of strongly homologous gene; enzyme. (351 aa)    
Predicted Functional Partners:
CCH88973.1
Two-component system, NarL family, response regulator DesR; Function of strongly homologous gene; regulator.
 
  0.958
CCH87196.1
Two-component system, NarL family, response regulator DesR; Function of strongly homologous gene; regulator.
 
  0.896
CCH88969.1
Homologs of previously reported genes of unknown function.
 
    0.847
CCH88970.1
ABC-type multidrug transport system, ATPase component (fragment); Function of strongly homologous gene; transporter.
 
     0.778
CCH88971.1
Sulfate-transporting ATPase; Function of strongly homologous gene; enzyme.
 
     0.715
CCH87194.1
ABC transporter; Function of strongly homologous gene; transporter.
 
    0.570
CCH88974.1
Homologs of previously reported genes of unknown function.
       0.532
CCH88081.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
  
     0.482
CCH87398.1
Putative two-component system sensor kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.461
CCH87009.1
Two-component system response regulator (fragment); Function of strongly homologous gene; regulator.
 
  0.450
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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