STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89000.1Phosphoesterase, PA-phosphatase related; Function of strongly homologous gene; enzyme. (317 aa)    
Predicted Functional Partners:
CCH88999.1
Silent information regulator protein Sir2; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.774
CCH88998.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  0.742
CCH88079.1
Homologs of previously reported genes of unknown function.
 
     0.554
fabG-5
3-oxoacyl-[acyl-carrier-protein] reductase; Function of strongly homologous gene; enzyme.
 
 
   0.543
CCH86706.1
Homologs of previously reported genes of unknown function.
  
     0.525
acnA
Aconitate hydratase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.492
CCH86069.1
Homologs of previously reported genes of unknown function.
  
   0.473
CCH85838.1
Putative drug resistance dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.450
CCH86742.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
    0.430
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
  0.424
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.