STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CCH89016.1Metal-sulfur cluster biosynthetic enzyme; Function of strongly homologous gene; putative cell process. (123 aa)    
Predicted Functional Partners:
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
 
  
 0.993
sufC
ABC transporter associated with Fe-S cluster assembly, ATP binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.977
sufB
Transport protein associated with Fe-S cluster assembly, sufB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
   
 0.961
sufD
FeS assembly protein SufD; Function of strongly homologous gene; cell process.
 
   
 0.954
sufS
Cysteine desulfurase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.933
sufR
Iron-sulfur cluster transcriptional regulator; Function of strongly homologous gene; factor.
     
 0.882
sufE
Ferredoxin containing [2Fe-2S] Rieske domain; Function of strongly homologous gene; carrier.
    
 0.785
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.716
pobB
Phenoxybenzoate dioxygenase subunit beta; Function of strongly homologous gene; enzyme.
  
 
 0.708
paaE
Phenylacetic acid degradation NADH oxidoreductase; Function of strongly homologous gene; enzyme.
  
 
 0.708
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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