STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufSCysteine desulfurase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (445 aa)    
Predicted Functional Partners:
sufC
ABC transporter associated with Fe-S cluster assembly, ATP binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 0.996
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
 
 
 0.994
sufB
Transport protein associated with Fe-S cluster assembly, sufB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.994
sufD
FeS assembly protein SufD; Function of strongly homologous gene; cell process.
 
 0.978
CCH89016.1
Metal-sulfur cluster biosynthetic enzyme; Function of strongly homologous gene; putative cell process.
 
  
 0.932
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
   
 0.907
CCH89434.1
Thioredoxin reductase (NADPH); Function of strongly homologous gene; enzyme.
  
 
 0.907
trxB
Two component thioredoxin reductase carring response regulator; Function of strongly homologous gene; enzyme.
  
 
  0.905
metB
Cystathionine gamma-synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.905
CCH86704.1
Thioredoxin-disulfide reductase; Function of strongly homologous gene; enzyme.
  
 
  0.903
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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