Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sufEFerredoxin containing [2Fe-2S] Rieske domain; Function of strongly homologous gene; carrier. (118 aa)    
Predicted Functional Partners:
sufD
FeS assembly protein SufD; Function of strongly homologous gene; cell process.
 
     0.826
CCH88323.1
Ferredoxin reductase; Function of strongly homologous gene; enzyme.
 
 
 0.810
sufB
Transport protein associated with Fe-S cluster assembly, sufB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.800
sufR
Iron-sulfur cluster transcriptional regulator; Function of strongly homologous gene; factor.
       0.800
CCH88416.1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Function of strongly homologous gene; enzyme.
 
 
 0.785
CCH89016.1
Metal-sulfur cluster biosynthetic enzyme; Function of strongly homologous gene; putative cell process.
    
 0.785
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
       0.776
sufC
ABC transporter associated with Fe-S cluster assembly, ATP binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.776
sufS
Cysteine desulfurase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.755
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.742
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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