STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appAABC-type dipeptide transport system; Function of strongly homologous gene; transporter. (563 aa)    
Predicted Functional Partners:
appC
Oligopeptide transport system permease protein appC; Function of strongly homologous gene; transporter.
 
 0.794
CCH88344.1
ABC-type oligopeptide transport permease; Function of strongly homologous gene; transporter.
 
 0.759
CCH89428.1
Permease of peptide ABC transporter; Function of strongly homologous gene; transporter.
 
 
 0.731
CCH89594.1
Peptide transport permease; Function of strongly homologous gene; transporter.
 
 
 0.731
CCH86582.1
Putative peptide transport permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.724
CCH88193.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 
 
 0.721
CCH88395.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 
 
 0.711
CCH87619.1
Binding-protein-dependent transport systems inner membrane component; Function of strongly homologous gene; transporter.
 
 
 0.709
CCH88345.1
Peptide ABC transporter permease subunit; Function of strongly homologous gene; transporter.
 
 
 0.699
CCH88174.1
Oligopeptide ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
 
 0.693
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.