STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amdA-3Acetamidase/formamidase; Function of strongly homologous gene; enzyme. (333 aa)    
Predicted Functional Partners:
CCH89058.1
3-ketoacyl-CoA reductase; Function of strongly homologous gene; enzyme.
 
     0.876
lldD-2
L-lactate dehydrogenase [cytochrome] 2; Function of strongly homologous gene; enzyme.
       0.675
CCH89061.1
Protein of unknown function; No homology to any previously reported sequences.
       0.636
apeH
Dipeptidyl aminopeptidase/acylaminoacyl peptidase; Function of strongly homologous gene; enzyme.
       0.636
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.574
CCH89057.1
Homologs of previously reported genes of unknown function.
       0.564
fmdA-2
Formamidase (formamide amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.545
CCH89063.1
Putative Imidazolonepropionase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.466
CCH89820.1
Acylphosphatase; Function of strongly homologous gene; enzyme.
     
  0.444
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.