Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH89079.1Homologs of previously reported genes of unknown function. (346 aa)    
Predicted Functional Partners:
CCH89078.1
NUDIX hydrolase; Function of strongly homologous gene; enzyme; Belongs to the Nudix hydrolase family.
 
     0.730
CCH90084.1
F420-dependent oxidoreductase; Function of strongly homologous gene; enzyme.
 
   
 0.726
cofD
LPPG:FO 2-phospho-L-lactate transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.688
CCH86222.1
Homologs of previously reported genes of unknown function.
  
     0.544
CCH88677.1
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; Function of strongly homologous gene; enzyme.
  
     0.544
CCH86807.1
Homologs of previously reported genes of unknown function.
  
   
 0.526
CCH89448.1
F420-dependent oxidoreductase, G6PDH family.
  
     0.480
CCH89077.1
Protein of unknown function; No homology to any previously reported sequences.
       0.448
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.428
fbiC
FO synthase, 7, 8-didemethyl-8-hydroxy-5-deazariboflavin synthase; Function of strongly homologous gene; enzyme.
 
  
 0.423
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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