STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89084.1Alpha/beta hydrolase; Function of strongly homologous gene; enzyme. (524 aa)    
Predicted Functional Partners:
CCH89085.1
Putative Serine-type D-Ala-D-Ala carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.715
CCH89612.1
Endonuclease/exonuclease/phosphatase; Function of strongly homologous gene; enzyme.
  
  
 0.653
lig
ATP-dependent DNA ligase; Function of strongly homologous gene; enzyme.
       0.561
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.553
nucS
Putative nuclease; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.513
CCH89086.1
Putative DNA polymerase LigD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.496
CCH89312.1
Homologs of previously reported genes of unknown function.
  
     0.445
CCH90077.1
Homologs of previously reported genes of unknown function.
  
     0.435
CCH89082.1
Protein of unknown function; No homology to any previously reported sequences.
       0.426
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.