Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sigERNA polymerase sigma-E factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily. (212 aa)    
Predicted Functional Partners:
CCH89094.1
Protein of unknown function; No homology to any previously reported sequences.
       0.773
rpoE
RNA polymerase, sigma subunit, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.692
rpoE-2
RNA polymerase, sigma subunit, ECF family (modular protein); Function of strongly homologous gene; enzyme; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.692
sigE-2
RNA polymerase sigma-E factor; Function of strongly homologous gene; factor.
  
     0.620
rpoE-3
RNA polymerase sigma-E factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.583
sigX
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; enzyme; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.571
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.570
CCH89096.1
Protein of unknown function; No homology to any previously reported sequences.
       0.551
CCH85675.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.465
sigK
RNA polymerase sigma factor, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.440
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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