Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH89102.1Two-component response regulator receiver and ANTAR, GAF and CheY domains; Function of strongly homologous gene; regulator. (242 aa)    
Predicted Functional Partners:
CCH89101.1
Protein of unknown function; No homology to any previously reported sequences.
 
    
0.824
CCH87473.1
Homologs of previously reported genes of unknown function.
 
     0.778
CCH89389.1
Homologs of previously reported genes of unknown function.
 
     0.712
CCH88506.1
Homologs of previously reported genes of unknown function.
 
     0.703
CCH88672.1
Homologs of previously reported genes of unknown function.
 
     0.675
CCH89622.1
Homologs of previously reported genes of unknown function.
  
     0.584
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.517
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.513
CCH85820.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
  
 
   0.492
CCH87519.1
Putative Pyridoxamine 5'-phosphate oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.466
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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