Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89132.1Homologs of previously reported genes of unknown function. (163 aa)    
Predicted Functional Partners:
CCH89134.1
Homologs of previously reported genes of unknown function.
  
  
 0.668
CCH89135.1
Homologs of previously reported genes of unknown function.
     
 0.653
CCH89136.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.642
CCH89133.1
Exported protein of unknown function; No homology to any previously reported sequences.
       0.636
CCH89137.1
Homologs of previously reported genes of unknown function.
       0.631
CCH89138.1
Exported protein of unknown function; No homology to any previously reported sequences.
       0.631
CCH89139.1
Homologs of previously reported genes of unknown function.
       0.631
CCH89128.1
Homologs of previously reported genes of unknown function.
       0.500
CCH89129.1
Type IV secretory pathway VirD4-like; Function of strongly homologous gene; cell process.
       0.485
CCH89130.1
Protein of unknown function; No homology to any previously reported sequences.
       0.485
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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