STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sigE-2RNA polymerase sigma-E factor; Function of strongly homologous gene; factor. (80 aa)    
Predicted Functional Partners:
sigE
RNA polymerase sigma-E factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.620
CCH90704.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.582
CCH87659.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.574
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.570
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
   
 0.444
CCH89834.1
Transcriptional regulator, AsnC family; Function of strongly homologous gene; regulator.
  
    0.413
CCH88740.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
   
 0.409
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.