Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89149.1Homologs of previously reported genes of unknown function. (276 aa)    
Predicted Functional Partners:
CCH89148.1
Homologs of previously reported genes of unknown function.
 
     0.657
CCH89150.1
Protein of unknown function; No homology to any previously reported sequences.
       0.535
CCH90632.1
Homologs of previously reported genes of unknown function.
  
  
 
0.480
CCH85546.1
Homologs of previously reported genes of unknown function.
  
  
 
0.463
CCH86802.1
Homologs of previously reported genes of unknown function.
 
    0.446
CCH89732.1
Anti-sigma factor; Function of strongly homologous gene; factor.
  
    0.437
CCH89071.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.426
CCH86188.1
Osmoprotectant transport system substrate-binding protein; Function of strongly homologous gene; transporter.
  
    0.402
CCH87735.1
Osmoprotectant transport system substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.402
CCH89158.1
Homologs of previously reported genes of unknown function.
  
  
 
0.400
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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