STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pfpI-2Intracellular protease, PfpI family; Function of strongly homologous gene; enzyme. (191 aa)    
Predicted Functional Partners:
CCH89195.1
Homologs of previously reported genes of unknown function.
  
    0.785
fdh-7
S-(hydroxymethyl)glutathione dehydrogenase; Function of strongly homologous gene; enzyme.
  
    0.782
fdh-6
Formaldehyde dehydrogenase; Function of strongly homologous gene; enzyme.
  
    0.775
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.451
katA-2
Catalase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the catalase family.
  
 
 0.451
acuC
Acetoin dehydrogenase; Function of strongly homologous gene; enzyme.
    
  0.442
rpsJ
30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.422
sdhB
Succinate dehydrogenase subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.413
CCH87852.1
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Function of strongly homologous gene; enzyme.
   
 
 0.413
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.