STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89214.1Putative lysyl tRNA synthetase-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (118 aa)    
Predicted Functional Partners:
CCH86594.1
Homologs of previously reported genes of unknown function.
  
     0.587
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.570
CCH89215.1
Protein of unknown function; No homology to any previously reported sequences.
       0.550
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.533
CCH86288.1
Homologs of previously reported genes of unknown function.
  
     0.498
CCH90077.1
Homologs of previously reported genes of unknown function.
  
     0.479
CCH86612.1
Homologs of previously reported genes of unknown function.
  
     0.475
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
   
 0.470
CCH87087.1
Putative cytochrome c biogenesis membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.463
CCH90367.1
ResB protein required for cytochrome c biosynthesis; Function of strongly homologous gene; cell process.
  
     0.460
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.