STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH89216.1Putative LysM domain peptidoglycan-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (1100 aa)    
Predicted Functional Partners:
CCH89218.1
TadE membrane protein; Function of strongly homologous gene; cell process.
 
     0.949
CCH89225.1
Homologs of previously reported genes of unknown function.
 
     0.881
CCH89221.1
Type II secretion system protein F; Function of strongly homologous gene; cell process.
 
     0.879
CCH89222.1
Flp pilus assembly protein TadB; Function of strongly homologous gene; cell process.
 
     0.879
CCH89224.1
Homologs of previously reported genes of unknown function.
 
     0.871
CCH89226.1
Homologs of previously reported genes of unknown function.
 
     0.851
CCH87123.1
Homologs of previously reported genes of unknown function.
 
     0.803
CCH89136.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
 
 
 0.802
CCH88531.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.801
CCH87115.1
Homologs of previously reported genes of unknown function.
 
     0.799
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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