STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89222.1Flp pilus assembly protein TadB; Function of strongly homologous gene; cell process. (284 aa)    
Predicted Functional Partners:
CCH89221.1
Type II secretion system protein F; Function of strongly homologous gene; cell process.
 
  
  0.967
CCH89225.1
Homologs of previously reported genes of unknown function.
 
 
  0.956
CCH89224.1
Homologs of previously reported genes of unknown function.
 
  
 0.955
CCH89226.1
Homologs of previously reported genes of unknown function.
 
     0.946
CCH89223.1
Flp pilus assembly protein, ATPase CpaF; Function of strongly homologous gene; cell process.
 
 
 0.922
CCH89218.1
TadE membrane protein; Function of strongly homologous gene; cell process.
 
  
 0.912
CCH87116.1
Homologs of previously reported genes of unknown function.
 
 
 0.898
CCH89216.1
Putative LysM domain peptidoglycan-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
     0.879
CCH87119.1
Flp pilus assembly protein TadC; Function of strongly homologous gene; cell process.
 
  
  0.863
CCH88554.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
  
  0.863
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.