STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89228.1Integrase catalytic region; Function of strongly homologous gene; enzyme. (287 aa)    
Predicted Functional Partners:
CCH89229.1
Transposase; Function of strongly homologous gene; enzyme.
 
    0.937
CCH89153.1
Transposase; Function of strongly homologous gene; enzyme.
 
    0.736
CCH89221.1
Type II secretion system protein F; Function of strongly homologous gene; cell process.
       0.686
CCH89222.1
Flp pilus assembly protein TadB; Function of strongly homologous gene; cell process.
       0.686
CCH89223.1
Flp pilus assembly protein, ATPase CpaF; Function of strongly homologous gene; cell process.
  
    0.686
CCH89224.1
Homologs of previously reported genes of unknown function.
       0.686
CCH89225.1
Homologs of previously reported genes of unknown function.
       0.686
CCH89226.1
Homologs of previously reported genes of unknown function.
       0.686
CCH89220.1
Protein of unknown function; No homology to any previously reported sequences.
       0.616
CCH89122.1
Protein of unknown function; No homology to any previously reported sequences.
 
    0.600
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.