STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89238.1Diguanylate cyclase with PAS/PAC sensor; Function of strongly homologous gene; enzyme. (288 aa)    
Predicted Functional Partners:
CCH87356.1
Putative Diguanylate cyclase/phosphodiesterase with GAF sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 0.989
CCH89255.1
Diguanylate cyclase/phosphodiesterase; Function of strongly homologous gene; enzyme.
 0.981
CCH89914.1
Putative diguanylate phosphodiesterase (EAL domain) with GAF sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 0.977
CCH85629.1
Putative Diguanylate cyclase/phosphodiesterase with GAF sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 0.967
CCH87436.1
Diguanylate phosphodiesterase; Function of strongly homologous gene; enzyme.
 0.931
CCH90658.1
Sensor protein with an histidine kinase signal transduction domain; Function of strongly homologous gene; regulator.
  
 0.930
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 0.905
CCH90323.1
Diguanylate cyclase (GGDEF) domain-containing protein; Function of strongly homologous gene; enzyme.
 
 0.904
CCH85779.1
Diguanylate phosphodiesterase, EAL domain-containing protein; Function of strongly homologous gene; enzyme.
 0.876
CCH89243.1
Diguanylate phosphodiesterase; Function of strongly homologous gene; enzyme.
 0.871
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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