STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89252.1ABC transporter; Function of strongly homologous gene; transporter. (266 aa)    
Predicted Functional Partners:
CCH87193.1
ABC transporter, ATP-binding; Function of strongly homologous gene; transporter.
   
0.920
CCH89254.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.801
CCH86301.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
 
     0.673
CCH89253.1
Homologs of previously reported genes of unknown function.
       0.561
CCH87107.1
Nod factor export ATP-binding protein I (fragment).
  
     0.551
CCH88805.1
ABC-type branched-chain amino acid transport systems, ATPase component; Function of strongly homologous gene; enzyme.
     
0.549
MODMU_2354
Fragment of putative modular protein: ATP-binding protein (ABC transporter component)(N-terminal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
    
0.528
CCH89251.1
Homologs of previously reported genes of unknown function.
       0.498
CCH86304.1
ABC efflux pump, inner membrane subunit, DrrB family; Function of strongly homologous gene; transporter.
  
 0.430
CCH89250.1
Homologs of previously reported genes of unknown function.
       0.429
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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