STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89282.1Integrase; Function of strongly homologous gene; enzyme. (334 aa)    
Predicted Functional Partners:
CCH89087.1
Putative Tyrosine recombinase xerC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family.
  
     0.679
CCH86977.1
Integrase family protein; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
  
     0.633
ftsK
DNA translocase ftsK; Function of strongly homologous gene; cell process.
 
   
 0.592
CCH89281.1
Protein of unknown function; No homology to any previously reported sequences.
       0.541
CCH88566.1
Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
  
     0.521
CCH86153.1
PRPP-binding protein, adenine/guanine phosphoribosyltransferase; Function of strongly homologous gene; enzyme.
  
    0.440
nudF
ADP-ribose pyrophosphatase; Function of strongly homologous gene; enzyme.
  
  
 0.426
CCH85999.1
Prephenate dehydrogenase; Function of strongly homologous gene; enzyme.
  
    0.422
CCH90066.1
Predicted amidophosphoribosyltransferase; Function of strongly homologous gene; carrier.
   
    0.418
parB
Chromosome-partitioning protein parB; Function of homologous gene experimentally demonstrated in an other organism; cell process; Belongs to the ParB family.
  
  
 0.416
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.