STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89289.1L-threonine 3-dehydrogenase; Function of strongly homologous gene; enzyme. (347 aa)    
Predicted Functional Partners:
CCH86790.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
  0.905
CCH90507.1
NAD/mycothiol-dependent formaldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 
0.479
adhfe
Alcohol dehydrogenase, iron-type; Function of strongly homologous gene; enzyme.
  
 
 0.470
adhB
Alcohol dehydrogenase B, Zn-dependent; Function of strongly homologous gene; enzyme.
 
 
 
0.428
adh-2
Alcohol dehydrogenase B; Function of strongly homologous gene; enzyme.
  
 
 
0.427
adhB-3
Alcohol dehydrogenase B; Function of strongly homologous gene; enzyme.
 
 
 
0.424
adh-4
Alcohol dehydrogenase B; Function of strongly homologous gene; enzyme.
  
 
 
0.421
CCH87817.1
Aryl-alcohol dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
 
0.420
adhB-2
Alcohol dehydrogenase B; Function of strongly homologous gene; enzyme.
 
 
 
0.419
xylB
Aryl-alcohol dehydrogenase; Function of strongly homologous gene; enzyme.
  
 
 
0.415
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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