STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89308.1Chlorite dismutase; Function of strongly homologous gene; enzyme. (237 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 0.981
hemY
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
  
 0.913
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.893
CCH89312.1
Homologs of previously reported genes of unknown function.
 
     0.841
CCH89309.1
Homologs of previously reported genes of unknown function.
       0.773
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.611
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
     0.603
CCH86711.1
Drug exporter of the RND superfamily-like protein; Function of strongly homologous gene; transporter.
  
     0.540
hemD
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
 
     0.530
CCH89314.1
3'-5' exonuclease; Function of strongly homologous gene; enzyme.
       0.509
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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