STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89312.1Homologs of previously reported genes of unknown function. (207 aa)    
Predicted Functional Partners:
CCH89314.1
3'-5' exonuclease; Function of strongly homologous gene; enzyme.
 
    0.869
CCH89308.1
Chlorite dismutase; Function of strongly homologous gene; enzyme.
 
     0.841
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.758
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.750
CCH88096.1
Transcriptional regulator, MerR family; Function of strongly homologous gene; regulator.
  
     0.742
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
     0.729
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.706
CCH87401.1
Homologs of previously reported genes of unknown function.
  
     0.695
hemY
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
       0.654
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.654
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.