STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89320.1Homologs of previously reported genes of unknown function. (122 aa)    
Predicted Functional Partners:
CCH88891.1
DNA polymerase III, alpha subunit; Function of strongly homologous gene; enzyme; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
  
     0.737
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.649
CCH90074.1
Putative phospho-glucose isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.591
CCH89851.1
Putative protease (CAAX amino terminal family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.581
CCH89321.1
Deoxyribonuclease/rho motif-related TRAM; Function of strongly homologous gene; enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.552
CCH89225.1
Homologs of previously reported genes of unknown function.
  
     0.523
CCH87118.1
Type II secretion system F domain protein; Function of strongly homologous gene; cell process.
  
     0.518
CCH89222.1
Flp pilus assembly protein TadB; Function of strongly homologous gene; cell process.
  
     0.494
CCH89218.1
TadE membrane protein; Function of strongly homologous gene; cell process.
  
     0.483
CCH88554.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
     0.460
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.