STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89325.1Homologs of previously reported genes of unknown function. (260 aa)    
Predicted Functional Partners:
CCH89328.1
Homologs of previously reported genes of unknown function.
 
     0.896
CCH86937.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
  
 0.803
CCH89559.1
ABC transporter (ATP binding protein)(tauB-like); Function of strongly homologous gene; transporter.
  
 0.803
CCH86268.1
Homologs of previously reported genes of unknown function.
  
 0.722
CCH86940.1
Homologs of previously reported genes of unknown function.
  
 0.722
CCH89557.1
ABC-type nitrate/sulfonate/bicarbonate transport system, extracellular component; Function of strongly homologous gene; transporter.
  
 0.722
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.712
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
     
 0.704
CCH89326.1
Nucleic acid binding OB-fold tRNA/helicase; Function of strongly homologous gene; enzyme.
       0.703
CCH88952.1
Homologs of previously reported genes of unknown function.
  
     0.692
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.