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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89326.1Nucleic acid binding OB-fold tRNA/helicase; Function of strongly homologous gene; enzyme. (137 aa)    
Predicted Functional Partners:
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
     
 0.836
CCH89328.1
Homologs of previously reported genes of unknown function.
       0.829
CCH89322.1
Putative amino acid permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     0.825
CCH89327.1
Lipase/esterase; Function of strongly homologous gene; enzyme.
       0.773
trkA-2
Trk system potassium uptake protein trkA; Function of strongly homologous gene; transporter.
  
     0.763
trkA
Trk system potassium uptake protein trkA; Function of strongly homologous gene; transporter.
  
     0.752
kdpD
Sensor protein kdpD; Function of strongly homologous gene; enzyme.
    
 0.703
CCH89325.1
Homologs of previously reported genes of unknown function.
       0.696
CCH89331.1
Homologs of previously reported genes of unknown function.
 
     0.634
CCH90034.1
Conserved protein of unknown function, putative ATP-binding domain; Homologs of previously reported genes of unknown function.
  
     0.616
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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