STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ideRIron-dependent repressor ideR; Function of strongly homologous gene; regulator. (241 aa)    
Predicted Functional Partners:
CCH87880.1
Zn/Fe uptake regulator, Fur family; Function of strongly homologous gene; regulator; Belongs to the Fur family.
  
  
 0.677
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Function of strongly homologous gene; enzyme.
      
 0.671
CCH89355.1
Acetate--CoA ligase (NDP forming); Function of strongly homologous gene; enzyme.
       0.638
acuC
Acetoin dehydrogenase; Function of strongly homologous gene; enzyme.
       0.638
hemA-2
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
   
  
 0.630
CCH86277.1
Putative DNA/RNA helicase, superfamily II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.599
fur
Ferric uptake regulation protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the Fur family.
  
  
 0.581
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
   
  
 0.552
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.542
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.526
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.