Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89359.1Homologs of previously reported genes of unknown function. (352 aa)    
Predicted Functional Partners:
CCH86280.1
Homologs of previously reported genes of unknown function.
  
     0.621
CCH88000.1
Homologs of previously reported genes of unknown function.
  
     0.600
CCH89970.1
Putative sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.582
CCH85763.1
Homologs of previously reported genes of unknown function.
  
     0.550
CCH85512.1
Zn-dependent hydrolase; Function of strongly homologous gene; enzyme.
  
     0.512
CCH86129.1
Homologs of previously reported genes of unknown function.
  
     0.505
MODMU_4496
Fragment of HNH endonuclease (part 1); Function of strongly homologous gene; enzyme.
  
     0.481
CCH89919.1
Homologs of previously reported genes of unknown function.
  
     0.478
CCH89360.1
Homologs of previously reported genes of unknown function.
       0.476
CCH89361.1
Homologs of previously reported genes of unknown function.
       0.476
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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