Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pip-2Proline iminopeptidase; Function of strongly homologous gene; enzyme; Belongs to the peptidase S33 family. (316 aa)    
Predicted Functional Partners:
dksA
DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein; Function of strongly homologous gene; regulator.
       0.773
CCH89369.1
Antibiotic resistance ATP-binding protein; Function of strongly homologous gene; transporter.
       0.540
CCH89370.1
ABC-2 type transporter (modular protein); Function of strongly homologous gene; transporter.
       0.540
paaC
Phenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.530
motB
Flagellar motor protein B; Function of strongly homologous gene; structure.
      
 0.523
CCH89598.1
Putative proline iminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.439
accC
Carbamoyl-phosphate synthase L chain ATP-binding protein; Function of strongly homologous gene; enzyme.
   
 0.411
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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