STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89373.1Homologs of previously reported genes of unknown function. (452 aa)    
Predicted Functional Partners:
CCH89372.1
Homologs of previously reported genes of unknown function.
       0.673
CCH89371.1
Transcriptional regulator, winged helix family; Function of strongly homologous gene; regulator.
       0.614
CCH89374.1
Aminoacylase; Function of strongly homologous gene; enzyme.
       0.594
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.587
CCH89375.1
Amidohydrolase; Function of strongly homologous gene; enzyme.
       0.511
CCH88245.1
Homologs of previously reported genes of unknown function.
      
 0.416
CCH89339.1
Putative vancomycin resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
     0.403
dusB
tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
 
     0.401
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.