STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89379.1Homologs of previously reported genes of unknown function. (349 aa)    
Predicted Functional Partners:
CCH89378.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
       0.610
CCH90198.1
2'-5' RNA ligase; Function of strongly homologous gene; enzyme.
 
     0.505
CCH89377.1
Putative Chloramphenicol resistance protein, permease of the major facilitator superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.457
CCH90664.1
Putative abortive infection protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.444
CCH85524.1
Homologs of previously reported genes of unknown function.
 
     0.442
CCH90126.1
Homologs of previously reported genes of unknown function.
 
     0.429
glgP
Glycogen phosphorylase; Function of strongly homologous gene; enzyme.
  
  
 0.428
CCH85975.1
Homologs of previously reported genes of unknown function.
  
    0.408
CCH87746.1
Homologs of previously reported genes of unknown function.
  
     0.404
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.