STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89406.1Protein of unknown function, putative recB domain; No homology to any previously reported sequences. (1146 aa)    
Predicted Functional Partners:
CCH89154.1
Transposase; Function of strongly homologous gene; enzyme.
  
  
 0.827
CCH90263.1
Integrase, catalytic core; Function of strongly homologous gene; enzyme.
  
  
 0.827
CCH88956.1
Homologs of previously reported genes of unknown function.
  
    0.811
CCH86364.1
Homologs of previously reported genes of unknown function.
  
    0.805
vsr-2
DNA mismatch endonuclease vsr; Function of strongly homologous gene; enzyme.
       0.774
vsr
DNA mismatch endonuclease vsr (fragment); Function of strongly homologous gene; enzyme.
       0.737
CCH89532.1
N-6 DNA methylase; Function of strongly homologous gene; enzyme.
  
  
 0.661
CCH90130.1
Putative acyltransferase 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.614
CCH85634.1
Protein of unknown function; No homology to any previously reported sequences.
       0.586
phaB
Poly(3-hydroxyalkanoate) depolymerase; Function of strongly homologous gene; enzyme.
       0.554
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.