Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phaA-2Poly(3-hydroxyalkanoate) polymerase 1; Function of strongly homologous gene; enzyme. (587 aa)    
Predicted Functional Partners:
phaB
Poly(3-hydroxyalkanoate) depolymerase; Function of strongly homologous gene; enzyme.
 
     0.938
CCH86913.1
Polyhydroxyalkanoate depolymerase, intracellular; Function of strongly homologous gene; enzyme.
 
  
 0.903
CCH87640.1
Poly(3-hydroxyalkanoate) synthetase; Function of strongly homologous gene; enzyme.
  
  
 
0.758
CCH89317.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.
     
 0.682
vsr-2
DNA mismatch endonuclease vsr; Function of strongly homologous gene; enzyme.
       0.554
CCH89406.1
Protein of unknown function, putative recB domain; No homology to any previously reported sequences.
       0.554
vsr
DNA mismatch endonuclease vsr (fragment); Function of strongly homologous gene; enzyme.
       0.530
pheT
Phenylalanyl-tRNA synthetase beta chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.462
CCH89309.1
Homologs of previously reported genes of unknown function.
  
     0.424
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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