STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89422.1Transcriptional regulator, RpiR family; Function of strongly homologous gene; regulator. (302 aa)    
Predicted Functional Partners:
iaaA
Isoaspartyl dipeptidase with L-asparaginase activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.828
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
  
 
  0.775
CCH89421.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
    
  0.734
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
     
 0.675
panE
2-dehydropantoate 2-reductase; Function of strongly homologous gene; enzyme.
       0.660
pip-3
Proline iminopeptidase; Function of strongly homologous gene; enzyme.
       0.660
CCH89420.1
Homologs of previously reported genes of unknown function.
       0.660
CCH89417.1
Alcohol dehydrogenase GroES domain protein; Function of strongly homologous gene; enzyme.
    
  0.636
CCH89414.1
Zn-dependent dipeptidase microsomal dipeptidase; Function of strongly homologous gene; enzyme.
       0.607
CCH89415.1
Putative peptidase M20; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.604
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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