STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89426.1ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily. (351 aa)    
Predicted Functional Partners:
appC
Oligopeptide transport system permease protein appC; Function of strongly homologous gene; transporter.
 0.997
CCH86582.1
Putative peptide transport permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 0.988
CCH88344.1
ABC-type oligopeptide transport permease; Function of strongly homologous gene; transporter.
 0.987
dppC
Dipeptide transport system permease protein dppC; Function of strongly homologous gene; transporter.
 0.985
CCH89428.1
Permease of peptide ABC transporter; Function of strongly homologous gene; transporter.
 0.970
CCH86581.1
Putative peptide transport permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.953
appA-2
ABC-type dipeptide transport system, extracellular component; Function of strongly homologous gene; transporter.
 
 0.917
CCH85688.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; enzyme.
 
     
0.885
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein opuCA; Function of strongly homologous gene; transporter.
 
     
0.883
CCH89594.1
Peptide transport permease; Function of strongly homologous gene; transporter.
 0.883
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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