STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89431.1Putative succinylglutamate desuccinylase / aspartoacylase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (279 aa)    
Predicted Functional Partners:
CCH89432.1
Putative peptidase, M38 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.762
CCH89430.1
Exported protein of unknown function; No homology to any previously reported sequences.
       0.558
CCH89433.1
Homologs of previously reported genes of unknown function.
       0.518
CCH88295.1
Aminotransferase class-III; Function of strongly homologous gene; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.489
gdh
Glutamate dehydrogenase (NAD); Function of strongly homologous gene; enzyme.
  
 
  0.472
appA-2
ABC-type dipeptide transport system, extracellular component; Function of strongly homologous gene; transporter.
       0.440
CCH89420.1
Homologs of previously reported genes of unknown function.
 
     0.431
CCH89416.1
Methylaspartate ammonia-lyase; Function of strongly homologous gene; enzyme.
 
     0.405
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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