STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89440.1Transcriptional regulator, tetR family; Function of strongly homologous gene; regulator. (266 aa)    
Predicted Functional Partners:
CCH89686.1
Transcriptional regulator, ArsR family; Function of strongly homologous gene; regulator.
  
     0.568
CCH89442.1
Homologs of previously reported genes of unknown function.
 
     0.544
CCH89439.1
Homologs of previously reported genes of unknown function; Belongs to the Dps family.
       0.490
CCH89441.1
Homologs of previously reported genes of unknown function.
       0.465
CCH86985.1
ABC transporter; Function of strongly homologous gene; transporter.
     
 0.461
CCH88506.1
Homologs of previously reported genes of unknown function.
  
     0.454
CCH86683.1
Diguanylate cyclase (GGDEF) with PAS domain; Function of strongly homologous gene; receptor.
  
 
 0.443
CCH86719.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); Function of strongly homologous gene; receptor.
  
 
 0.443
CCH87322.1
Diguanylate cyclase/phosphodiesterase; Function of strongly homologous gene; enzyme.
  
 
 0.443
CCH89177.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); Function of strongly homologous gene; receptor.
  
 
 0.443
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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