STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89450.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (386 aa)    
Predicted Functional Partners:
CCH88886.1
Protein of unknown function; No homology to any previously reported sequences.
   
 0.547
rhlE
ATP-dependent RNA helicase; Function of strongly homologous gene; enzyme.
   
 0.547
deaD
DEAD/DEAH box helicase; Function of strongly homologous gene; enzyme; Belongs to the DEAD box helicase family.
   
 0.547
rhlE-2
ATP-dependent RNA helicase; Function of strongly homologous gene; enzyme.
   
 0.547
CCH89449.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.540
CCH87325.1
Homologs of previously reported genes of unknown function.
  
    0.518
CCH90639.1
Homologs of previously reported genes of unknown function.
  
    0.518
CCH87298.1
Homologs of previously reported genes of unknown function.
 
 
 0.493
CCH87326.1
Homologs of previously reported genes of unknown function.
  
    0.461
CCH90439.1
Homologs of previously reported genes of unknown function.
  
    0.461
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.