STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89453.1N-methylhydantoinase B/acetone carboxylase, alpha subunit; Function of strongly homologous gene; enzyme. (626 aa)    
Predicted Functional Partners:
hyuA
N-methylhydantoinase A/acetone carboxylase, beta subunit; Function of strongly homologous gene; enzyme.
 0.999
CCH89452.1
Isochorismatase hydrolase; Function of strongly homologous gene; enzyme.
 
     0.939
hyuB
N-methylhydantoinase B/acetone carboxylase, alpha subunit; Function of strongly homologous gene; enzyme.
  
  
 
0.920
codA
Cytosine deaminase; Function of strongly homologous gene; enzyme.
     
  0.900
CCH88700.1
Putative cytosine deaminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
  0.900
cdd
Cytosine deaminase; Function of strongly homologous gene; enzyme.
     
  0.900
bar
Barbiturase; Responsible for the hydrolysis of barbituric acid (2,4,6- trihydroxy-1,3-pyrimidine), an intermediate in the oxidative catabolism of pyrimidines. Catalyzes the hydrolytic opening of the pyrimidine ring of barbituric acid to yield ureidomalonic acid; Belongs to the cyclic amide hydrolase (CyAH) family.
 
     0.527
CCH89451.1
Homologs of previously reported genes of unknown function.
       0.418
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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