STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89484.1Homologs of previously reported genes of unknown function. (171 aa)    
Predicted Functional Partners:
otsA
Trehalose-phosphate synthase; Function of strongly homologous gene; enzyme.
  
 
 0.840
CCH86706.1
Homologs of previously reported genes of unknown function.
  
 0.769
CCH87919.1
RNA polymerase, sigma 54 (sigma N) factor; Function of strongly homologous gene; factor.
   
    0.687
CCH87934.1
Conserved protein of unknown function, TPR repeats; Homologs of previously reported genes of unknown function.
   
    0.542
CCH89640.1
Homologs of previously reported genes of unknown function.
   
    0.542
fruK
1-phosphofructokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the carbohydrate kinase PfkB family.
  
    0.520
treZ
Malto-oligosyltrehalose trehalohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.512
CCH89483.1
Homologs of previously reported genes of unknown function.
       0.512
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.512
glgP
Glycogen phosphorylase; Function of strongly homologous gene; enzyme.
   
 0.477
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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