STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89531.1Type-1 restriction enzyme StySPI; Function of strongly homologous gene; enzyme. (394 aa)    
Predicted Functional Partners:
CCH89532.1
N-6 DNA methylase; Function of strongly homologous gene; enzyme.
 
 
 0.999
CCH89530.1
Type III restriction enzyme, restriction (R) subunit; Function of strongly homologous gene; enzyme.
 
 
 0.986
CCH85634.1
Protein of unknown function; No homology to any previously reported sequences.
     
 0.529
atpF
ATP synthase, subunit b, F0 sector; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
   
 
 0.510
CCH89740.1
Homologs of previously reported genes of unknown function.
  
    0.500
CCH89406.1
Protein of unknown function, putative recB domain; No homology to any previously reported sequences.
  
    0.498
CCH89461.1
Homologs of previously reported genes of unknown function.
  
  
 0.484
CCH89529.1
Protein of unknown function; No homology to any previously reported sequences.
  
    0.473
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.453
CCH88956.1
Homologs of previously reported genes of unknown function.
  
  
 0.408
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.