STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cddCytosine deaminase; Function of strongly homologous gene; enzyme. (150 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.866
deoA
Thymidine phosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.811
upp
Uracil phosphoribosyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UPRTase family.
 
 
 0.777
hisE
Phosphoribosyl-ATP pyrophosphatase; Function of strongly homologous gene; enzyme; Belongs to the PRA-PH family.
   
  
 0.743
CCH89548.1
ABC transporter, inner membrane subunit; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.707
CCH89550.1
ABC transporter (ATP-binding protein); Function of strongly homologous gene; enzyme.
       0.707
CCH89549.1
ABC-type transport permease; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.706
CCH89551.1
ABC transporter substrate-binding protein; Function of strongly homologous gene; transporter.
       0.704
pyrR
Bifunctional protein pyrR [Includes: Pyrimidine operon regulatory protein; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
    
  0.648
rihC
Non-specific ribonucleoside hydrolase rihC; Function of strongly homologous gene; enzyme.
    
  0.641
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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